Changelog

Source: NEWS.md

Release Notes Version 0.3

• [0.3.2]
  • released 2024-07-09
  • added rsp_eu shortcut for SPECIEUROPE profiles
• [0.3.1]
  • released 2024-06-12
  • added standard plot output handler for rsp_ and pls_ plots
  • added SPECIEUROPE data set; and renamed sysdata SPECIATE for consistency
  • added source argument to rsp(), ‘us’, ‘eu’, ‘all’ for extraction from SPECIATE, SPECIEUROPE or both; also added same to rsp_find_… functions
    
  • various function updates to handle SPECIEUROPE profiles
    
  • renamed rsp_q_… functions rsp_us_… because SPECIATE only
  • renamed rsp_x_… functions rsp_id_… (request after rsp_x objects added)
  • various fixes; some typos in docs; rsp_plot_species id tracking when species is factor
    
  • website update
• [0.3.0]
  • released 2024-05-17
  • code and documentation refresh…
    
  • added as.respeciate method; replacing related unexported code
  • sp_profile, sp_build_rsp_x updates; both now use as.respeciate
  • sp_profile to rsp_profile; sp_dcast/melt to rsp_dcast/melt; both as part of object class rebuild
  • sp_pad to rsp_pad; sp_rescale to rsp_rescale; class rebuild
  • sp_match_profile to rsp_match_profile; class rebuild
    
  • sp_cor to rsp_cor; sp_distance to rsp_dist; class rebuild
  • rsp_plots now track factors
  • pls_plots updated for object class

Release Notes Version 0.2

• [0.2.7]
  • released 2024-02-17
  • sp_plot_species update; species order forced, added reset.x
  • sp_match_profile update; fit methods for pd and sid (Belis)
  • sp_match_profile update; added sid variations
  • pls_plot patch; forcing profile order 1
• [0.2.6]
  • released 2023-12-01
  • sp_build_rsp_x update; added further value handling
  • summary.respeciate update; removed output print
  • pls_rebuild update; option to add species as marker
    
  • now importing lattice and latticeExtra for plot paneling
  • pls_plots and plot.respeciate now using lattice/latticeExtra
  • added sp_plot_profile and sp_profile_species
  • reduced padding on log scale y-axis
• [0.2.5]
  • released 2023-10-25
  • sp_build_rsp_x update; x converted to data.frame (trouble with tibbles!)
  • pls_plot update; changed mar settings
  • added first draft pls_test
• [0.2.4]
  • released 2023-10-14
  • added functions: pls_fit_species
  • added draft rsp_pls and rsp_x object classes
  • added draft sp_build_rsp_x
    
  • moved from importing data.table to data.table::as.data.table, etc…
• [0.2.3]
  • released 2023-09-26
  • added functions: sp_rescale_species, sp_dcast, sp_dcast_species sp_pad, sp_pls_profile
  • added draft spq_ quick profile build functions
  • added pls_ functions for sp_pls_profile outputs
  • sp_profile update: references not included by default
  • sp_match: changed n to matches; added min.n (so more consistent with other functions); now averages x
  • sp_species_cor: added heatmap and key list options
• [0.2.2]
  • released 2023-08-24
  • now imports data.table; moving to data.table methods for speed
  • changed news format because build_news missing previous md text
  • added functions: sp_rescale_profile, sp_dcast_profile, sp_species_cor, sp_profile_dist, sp_match_profile, sp_melt_wide
  • reduced object classes
• [0.2.1]
  • released 2023-06-21
  • updated sysdata (now using SPECIATE 5.2)
  • added sp_find_species
  • extended sp_find_profile; now searches by species_name
  • simplified plot.respeciate
• [0.2.0]
  • released 2021-05-26
  • Karl Ropkins joined
  • moved your sysdata.rda to the package data folder
  • reset lazy.data to TRUE
    
  • added an object class
  • added sp_find_profile (find_code but making object class)
  • added sp_profile (spec but making object class)
  • added crude print and plot methods for object classes
  • updated date and version
  • The new code is in R:speciate.0.2.r

Release Notes Version 0.1

• [0.1.0]
  • released 2020-12-20
    
  • Created respeciate